Science and medicine

Computational Biology @ University of Nebraska-Lincoln

Tool development in bioinformatics, computational biology, data visualization

databasefrontendjavajavascriptmysqlreactwebglbackendflaskpython

Organization website

Participation history

4 GSoC years

2019 2018 2017 2016

2019

5 projects

Official year page

ccNetViz Project : Advanced Custom Label And Text Formatting

The Purpose of this project is to add advanced label formatting features to the ccNetviz library for graph Visualizations without affecting the...

Code Project page

Advanced Node, Edge, Arrow Plugin Library

Advanced Node, Edge, Arrow Plugin Library This plugin draws the desired types of nodes and arrows on a non-visible canvas. These dynamically drawn...

Code Project page

Edge Animations for Large-Scale Network Graphs

With ccNetViz, this large graph render library using WebGL, I'll add edge animations on it. Including color animations, speed control and other fancy...

Code Project page

Web Pipeline for Flux Balance Analysis

The project is based upon Flux Balance Analysis, which is a model used for simulating metabolism. It is used in genome-scale reconstructions of...

Code Project page

Web Pipeline For Kinetic (ODE-Based) Models

Ordinary differential equations are widely used for modelling biological networks and processes of kinetics. The idea of the project is to create a ...

Code Project page

2018

4 projects

Official year page

Javascript/WebGL Library For Interactive Visualization Of Large-Scale Network Graphs: Expanded Features.

In this project I will add some new options to the CCNetViz JavaScript library (e.g. adding hide/show for nodes/edges, adding the context menu on...

Code Project page

ccNetViz

ccNetViz is a high-performance graph data visualization library that runs on WebGL (an in-browser library to run 3D graphics on GPU parallel...

Code Project page

Interactive Web Platform for R based Data Analysis

The goal of this project is to develop the final version of cross-platform web-based application that enables anyone to perform various statistical...

Code Project page

Candis: A Software Tool for Cancer Prediction And Biomarker Identification Using High-throughput Data

Candis (portmanteau of Cancer and Discover) is an Open Source data mining suite (released under the GNU General Public License v3) for DNA...

Code Project page

2017

4 projects

Official year page

Project Proposal-Javascript/WebGL Library For Interactive Visualization Of Large-Scale Network Graphs.

A brief description on the plan of action and my understanding of the visualization project.

Code Project page

Network Visualization Layouts

This proposal is focused in network visualization layouts. I intend to implement canonical algorithms for ccNetViz and to develop variations. Most...

Code Project page

Mobile-Based Blood-Sample Image Analysis(iOS)

The aim of this project is to use the camera and processing power of modern day cell phones to develop an intuitive and user-friendly application for...

Code Project page

CancerDiscover: a GUI for cancer prediction and biometric identification using microarray data

Problem As of today, CancerDiscover has a not-so-easy build and workflow for users to conduct microarray experiments. Moreover, the current setup...

Code Project page

2016

5 projects

Official year page

Idea 1: Javascript/WebGL Component For Interactive Visualization Of Large-Scale Network Graphs.

This project will center around the development of additional optimization techniques to enable interactive visualization of very large networks, as...

Code Project page

Interactive Platform for Statistical Computing

The goal of this project is to develop a web-based platform that enables anyone to perform various statistical computations in an easy-to-use,...

Code Project page

Boolean-based Representations of Biological Systems

The goal of this project is to develop a model that can visualize biological networks as logic gate circuits, and vice-versa. In recent years,...

Code Project page

Mobile Based Blood Analysis

The aim of this project is to use the camera and processing power of modern day cell phones to develop an intuitive and user-friendly application for...

Code Project page

Idea 1 - Ales Saska

Javascript/WebGL component for interactive visualization of large-scale network graphs

Code Project page