Science and medicine

caMicroscope

Toolkit for cancer imaging research

databasedeep learningjavascriptmachine learningmedical imagingmongodbpythontensorflowcomputer visionopencv

Organization website

Participation history

4 GSoC years

2024 2023 2021 2020

2024

3 projects

Official year page

Quality Triage via Image Visualization and Annotation

Develop a web application within caMicroscope to enable users to visually triage multiple slides, adding annotations such as quality scores or...

Code Project page

Pathologist Annotation Behavior Report

Many pathologists use caMicroscope to annotate WSI cases in their daily work. How pathologists annotate the slide and the different behaviors that...

Code Project page

Image Classification using Foundation Models

The aim of this project is to focus on patch-level classification tasks within the domain of whole slide tissue images. The approach involves...

Code Project page

2023

3 projects

Official year page

DICOM & BioFormats

My project goal was to add DICOM file support to caMicroscope, a Whole Slide Image viewer. The viewer backend (OpenSlide) didn't support DICOM, so we...

Code Project page

Machine Learning Training Assistant

To improve pathology data collection, caMicroscope has added specific tools for assisting with annotations and classifications. However, these tools...

Code Project page

Multi-channel Imaging Support

This project aims to add support for Multi-Channel Imaging in caMicroscope, a platform used for visualizing and analyzing medical imaging data....

Project page

2021

5 projects

Official year page

Real Time Collaborative Pathology

This project aims to develop a feature for Real Time Collaboration on the caMicroscope Slide Viewer which would give users the ability to work...

Code Project page

Cross-Slide Coordinated Viewing

Often, it's useful for users to compare different results on an image. To facilitate this, caMicrocope supports viewing the same image with different...

Code Project page

RBAC Authorization with Cache Implementation using higher order functions

Currently, caMicroscope uses attribute-based access control, which does not clearly represent the notion of authorization in users and faces...

Code Project page

Smart Pens

This project would involve adapting pathology annotation tools to prefer following edges in the base image when close and also add other smart...

Code Project page

Integrate an optical microscope with a camera and motorized stage - Collaboration with FDA

eeDAP is an evaluation environment for Digital and Analog Pathology. The software has two modes one for digital WSI image evaluation and other for...

Code Project page

2020

2 projects

Official year page

Pathology Algorithm Development Workbench

caMicroscope is a tool to view, annotate, and analyse biomedical images. The goal of this project is to make an algorithm development workbench where...

Code Project page

Cancer Region of Interest Extraction and Extending Features

At present caMicroscope has many features like marking up images, running machine learning models on individual images, getting the predictions and...

Code Project page